PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10029458

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 343aa MW: 36872.6 Da PI: 9.0138

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10029458	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.3e-37	77	137	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+n+k++ Lus10029458 77 PEAALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRTVPVGGGCRRNNKRT 137 67899***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-31	61	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	80	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAFPSSVSFY LDPSTWQQQQ QSLSTENGSG NNDRAIPPHP GGGNDGGNNN MMGSTSSAVR 60 KANSMAEKAR QAKIPQPEAA LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA 120 LRTVPVGGGC RRNNKRTNKS KRTSSSSKSP QGVGGDSCYD TSTTSAYVPT STSTTSIHHH 180 QLNLGQLPPL LPPLQHMHLG GYGNDMGLNF TGLLPSPANA PGSGVGSMLR MHQQNHHQLP 240 FFASLDQQQS SGVLYEPSSA RSEKLESAAA GNSLLMSRNF LGKFMSSSSS GGDHSNDNND 300 DQEMYSWQPP SSNNYDGWIS NTAVDATLPP GFTSPSSTSH LL*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAFPSSVSFY LDPSTWQQQQ QSLSTENGSG NNDRAIPPHP GGGNDGGNNN MMGSTSSAVR  60
KANSMAEKAR QAKIPQPEAA LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA  120
LRTVPVGGGC RRNNKRTNKS KRTSSSSKSP QGVGGDSCYD TSTTSAYVPT STSTTSIHHH  180
QLNLGQLPPL LPPLQHMHLG GYGNDMGLNF TGLLPSPANA PGSGVGSMLR MHQQNHHQLP  240
FFASLDQQQS SGVLYEPSSA RSEKLESAAA GNSLLMSRNF LGKFMSSSSS GGDHSNDNND  300
DQEMYSWQPP SSNNYDGWIS NTAVDATLPP GFTSPSSTSH LL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10029458

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10029458	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-39	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Lus10029458