PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029460
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 248aa    MW: 27312.2 Da    PI: 9.1343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000261601981154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  rR +++ +++ +L++l+ +      +K + a++L++A  +Ik L
  Lus10029460 160 RRKQKLSEKITTLQKLVSPY-----GKTDTASVLQEASLHIKLL 198
                  8999**************99.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.55149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-7160212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-5160203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRDSVIPLSS SHLCYNFGSS SNEALVMPSL DTSMPMDNTR ILNLDSFCWD SSNFINSYGS  60
PFEVLSTGYG LYSRCDTFSN QLKNVSFPAQ APVADNYVRA VIRLIDQSCS HGGQVRKRRI  120
EVSSRECKGG KRKKSSSVTT CEKTQQFIGI QEFKIEVPAR RKQKLSEKIT TLQKLVSPYG  180
KTDTASVLQE ASLHIKLLHK QLQQMLSQSA SAADDLETGL RSRGLCLLPL CLANKVTTDP  240
CTSLSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116133KRRIEVSSRECKGGKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100294600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.11e-11bHLH family protein