PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029767
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 273aa    MW: 29429.3 Da    PI: 4.2862
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029767genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-373490662
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                  +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+ ++s+
  Lus10029767 34 PNCPRCASSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRRTRRSK 90
                 58***************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-232579IPR003851Zinc finger, Dof-type
PfamPF027011.1E-313488IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.643488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMAADDQFIL PPRIIDTTTT TAQCQWKPHL QIAPNCPRCA SSNTKFCYYN NYSLSQPRYF  60
CKSCRRYWTK GGSLRNVPVG GGCRRTRRSK SSRSSRGPPP PPTDAQNTTS SGGGGDSSTS  120
SSDIDMAVVF AKFLNPAADG VTNSNSASST PESGQISEDH DGIVFPLGGN LADPYEFTDL  180
FREEGFLEGD DQINQEESMI DALGLQTLLS DEMAQLEAAL WTTSTAMDPG LPAASAAWEA  240
LEQSGFDASG DMNNWGCYDL QLQGNFDNFP GH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763882e-43AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843602e-43AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641184.12e-55dof zinc finger protein DOF1.2-like
RefseqXP_021681675.13e-55dof zinc finger protein DOF1.2-like
STRINGLus100297670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-31Dof family protein