PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029808
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 116aa    MW: 13417.2 Da    PI: 12.1812
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029808genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.71.7e-253888251
      G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmk.vkgLtlehvkSHLQ 51
                 pr rWtp+LH +F++av++LGG++kAtPk+il++m+ v+gL ++hvkSHLQ
  Lus10029808 38 PRFRWTPQLHLHFIHAVHSLGGIHKATPKRILQAMNnVEGLKISHVKSHLQ 88
                 8**********************************549************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-223588IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-183891IPR006447Myb domain, plants
SuperFamilySSF466893.23E-113893IPR009057Homeodomain-like
PfamPF002495.8E-64188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEDNIVNIHN HHRRRRSRWR RSSGGSGGAR PYNKSELPRF RWTPQLHLHF IHAVHSLGGI  60
HKATPKRILQ AMNNVEGLKI SHVKSHLQVP FFYHHSSSFS SSNHAQLDRS RIEFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-153988351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-153988351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-153988351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-153988351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-153988452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981307.16e-25probable transcription factor KAN4
SwissprotQ700D93e-21MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A151U1Z63e-24A0A151U1Z6_CAJCA; Putative Myb family transcription factor At1g14600 family
STRINGLus100298085e-79(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-20G2-like family protein