PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029852
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 1417aa    MW: 161045 Da    PI: 8.2137
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029852genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.11.2e-323864791103
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   +F++k+y++++d+++++++sw  +g++f+v  + efa++vLpkyFkh+nf+SFvRQLn++gF+k   e+         weF ++ Fkkg+++ll++i
   Lus10029852 386 SFVSKTYQLVDDPSTDHIVSWVGDGSTFLVRVPAEFARDVLPKYFKHNNFSSFVRQLNTFGFRKFAPER---------WEFVNEFFKKGEEHLLCQI 473
                   59****************************************************************999.........******************* PP

                   XXXXXX CS
  HSF_DNA-bind  98 krkkse 103
                   kr+k++
   Lus10029852 474 KRRKTQ 479
                   ***986 PP
2SBP91.59.1e-2911891263276
                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP    2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76  
                   Cqve+C +dls+a +yh+rh++Cevh +a+++lv+++ qrfC qC rfh l++fD++ r Cr+rLa++ +++r++
  Lus10029852 1189 CQVEDCGVDLSQAETYHQRHRICEVHYQASNALVRDVLQRFCLQCCRFHILEDFDDGERNCRSRLAGYHQKQRRQ 1263
                   ******************************************************************966555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078871.0E-9368345IPR012416CALMODULIN-BINDING PROTEIN60
Gene3DG3DSA:1.10.10.102.1E-34377471IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-49383476IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-30384476IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-29387476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-17387410IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-17425437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-17438450IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM0001510643665IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-5644690IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.126645673IPR000048IQ motif, EF-hand binding site
PfamPF006120.2646664IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022666688IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627669695IPR000048IQ motif, EF-hand binding site
PfamPF006120.0012670688IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.81E-6753801IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.013754776IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187756784IPR000048IQ motif, EF-hand binding site
PfamPF006121.0E-4757775IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0072777799IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.846780806IPR000048IQ motif, EF-hand binding site
PfamPF006123.8E-4781798IPR000048IQ motif, EF-hand binding site
SuperFamilySSF520583.74E-298971091IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.1E-249311086IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:4.10.1100.102.3E-2411851250IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.68311861263IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-2711871265IPR004333Transcription factor, SBP-box
PfamPF031101.4E-2211891262IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1417 aa     Download sequence    Send to blast
MFPRGKAAEE EKGHGRVDTE EFIDDFASKI EPTIRSVIRD EVNTIIRQAS GPTLEPLALG  60
VPAEGLILQF MDKIPSTIFT GSKIVTEDGS PVRIQLLNAS SNTVVKSGPF SSLKVEITVL  120
DGDFVSEDWS DRDFSRNVIR QRDGKRPLVT GELIIVLSDG VGQLGDLAFT DNSSWVRCRR  180
FRLGAKPVLK RTSGEVIRIR EGRSDPFAVK DHRGEGYQKH YPPRLGDEVW RLEKVAKGGK  240
LHNRLSSFGI NTVKELLQAN AVDQPALRNK VVGGVISNRV WDMIMVHANA CEVEENKFYA  300
YGKHGEGIRL LFDPLYKLVG ASFDDEKSYI PLDKLTNAQK ILVELFRGQE AIHDRMEMVP  360
VDSSSVAFTS FLPLEEVDHQ RKYVPSFVSK TYQLVDDPST DHIVSWVGDG STFLVRVPAE  420
FARDVLPKYF KHNNFSSFVR QLNTFGFRKF APERWEFVNE FFKKGEEHLL CQIKRRKTQT  480
FLKKDESKPS PDLKDNNSIS SQSSCLYNDS GITNRKWKQE TSAVTYSGSC ASEVTTWGQE  540
IPPFLTLCTE EEVASHVPNW LSLPKPESNL KAKSAWRKLR TALKFTSILT RRTRLIEAAK  600
VDFRLLSFQR MLKEQGNVKL SSISDEQAFS FIKVKGNMKP SWLVEAAAAR IQNKFRSWKA  660
RMEFLAILHK IVKIQAHVRG HHVRKNIKVI LSSVGITKKV VLRRRRNRSM LRGFRPGLVD  720
ESHRGSIQQH LSAGEDEQAL PLIKVKGNKK LAEPVEAAAV RIQRMFRSWK ARKEFLVILQ  780
KVVKIQAHVR GHHARKNFMV MSSSLSIVEK VVLRWKRNRS TLHGFRPELV DENHHSSIQP  840
DLSAREDDYG FFKEERKQTE ERSQIALVKA TSVIQLSEPK VEITQMKDLK FDMAKALQLQ  900
SFTSKQNLHS RNSMFTQEIY ISKYPSFQIS AHNFVSLVFP YCNFPQLWKG GEQLLVNLKS  960
MDLNHSNLFE IPNLSKAQKL ESVNLEGCGN LVGVPSIQYL TNLKNLNLKG CHGLKGLPSL  1020
IRLKFLNSLD LSDCSSLTRL PPSLGCLPNL CELNLRNCTK LDYLPRTVLH LMRSLETLNV  1080
SGCYSLWKPI NGDLVSNSTE GTCLESQSVK PVEFDAAGDS PSQDLSPEFN EMHGKEALEW  1140
ELDDYTSTAT PLIDYLPSKL RTRLLLHPAM DFEDKNDHGD TTRTVSVSCQ VEDCGVDLSQ  1200
AETYHQRHRI CEVHYQASNA LVRDVLQRFC LQCCRFHILE DFDDGERNCR SRLAGYHQKQ  1260
RRQSIATEDE KPSTLETDEN GSLYKRTKWE DWDEEANDAF GSIENDVLEM VEQLSSWNCD  1320
GKEVPEDVVA WLAELEQSVP ETVMSMKSAK AEAGVVGEKL KEMDARLVVG RVELSLLDKE  1380
MSRILKEEEE IEAQLQLLMD EKNRRDLLMQ QKGTEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2238447826131Heat shock factor protein 1
5d5v_B1e-2238447826131Heat shock factor protein 1
5d5v_D1e-2238447826131Heat shock factor protein 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100298520.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-46heat shock transcription factor B4