PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10029863
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 199aa    MW: 20978.1 Da    PI: 10.7201
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10029863genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-173064135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C  C+t+ TplWR+gp g+k+LCnaCG+++rk+++
  Lus10029863 30 CIDCKTSRTPLWRSGPAGPKSLCNACGIRHRKRRR 64
                 889*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-132476IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-122564No hitNo description
Gene3DG3DSA:3.30.50.102.1E-152864IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2153060IPR000679Zinc finger, GATA-type
CDDcd002021.37E-113064No hitNo description
PfamPF003201.9E-153064IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDLGDSMIES NPEAKLLGVG SEDHDGKKLC IDCKTSRTPL WRSGPAGPKS LCNACGIRHR  60
KRRRAAMALE TAASGKKRSK NHQTISPAAA AADSTSSSES TTTSTDTAKS SAVAAASGTT  120
SYAAAGQVRV RVVYSGKDKS TMIQKKKSSS SLPRPPAPIP LRPLVVVKKQ RCQRRRKLAE  180
EEQAAFCLMA LSCASVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10029863
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100298631e-142(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.18e-20GATA family protein