PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030105

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 319aa MW: 34860.7 Da PI: 8.6328

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030105	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	152.9	3e-47	12	172	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenl....ksnvekeesastsvsse 99 + eq+Cy+ CnfCn +lavsvP++ ++ vvtvrCGhCt+l svn+a a + +s ++l+ +++ ++ l s + + + + ++++ Lus10030105 12 AHEQLCYIPCNFCNIVLAVSVPYSNVMDVVTVRCGHCTNLWSVNMAAAFPYSSLSSPPPPPPLPHLQYHQGGGNHGLfpaaGSSASPSPPPAAATATN 109 679****************************************99884444443333444555444444333332000022222222222222222 PP YABBY 100 kl.senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 k s ++++p p +rPPekrqrvPsayn+fikeeiqrika+ Pdishreafs+aakn Lus10030105 110 KRsSAPPSRSLPYNDPrvPNRPPEKRQRVPSAYNQFIKEEIQRIKANKPDISHREAFSTAAKN 172 22233344444433333247****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-52	12	172	IPR006780	YABBY protein
SuperFamily	SSF47095	7.54E-5	125	170	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSSSSCVGEM VAHEQLCYIP CNFCNIVLAV SVPYSNVMDV VTVRCGHCTN LWSVNMAAAF 60 PYSSLSSPPP PPPLPHLQYH QGGGNHGLFP AAGSSASPSP PPAAATATNK RSSAPPSRSL 120 PYNDPRVPNR PPEKRQRVPS AYNQFIKEEI QRIKANKPDI SHREAFSTAA KNSRLVSLDL 180 WKLTRGMQSC TEIRLFSVIS TPCISPHDGI LSHMPPPTIR HWRIICDGSF KHNLQKGAIS 240 VRATISIAVT SLMTAADSTP STNATLEAHT KVFETREKDV LTWQTNNAKL ETEYELAKLS 300 QGDLDIHSYY LVASQLWT*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030105

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023538154.1	2e-56	axial regulator YABBY 5-like isoform X2
Swissprot	Q8GW46	3e-52	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2Z6NZZ8	1e-54	A0A2Z6NZZ8_TRISU; Uncharacterized protein
STRING	Lus10030105	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-50	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10030105

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]