PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030214
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29224.1 Da    PI: 5.0243
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030214genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1948100456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ft+eq++ Le+ Fe++  +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  Lus10030214  48 KRRFTDEQIKSLESIFESETRLEPRKKVQLAKELGLQPRQVAIWFQNKRARWK 100
                  679*************************************************9 PP
2HD-ZIP_I/II123.78.7e-4048138393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  krr+++eq+k+LE+ Fe+e++Lep++Kv+la+eLglqprqva+WFqn+RAR+k+kqlE+dy  L+++y++l+++ e+L+ke+++L+++l++
  Lus10030214  48 KRRFTDEQIKSLESIFESETRLEPRKKVQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYGILRANYNRLASRFESLKKEKQALAAQLQK 138
                  9***************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.39442102IPR001356Homeobox domain
SMARTSM003896.4E-1644106IPR001356Homeobox domain
SuperFamilySSF466891.71E-1844114IPR009057Homeodomain-like
CDDcd000866.12E-1548103No hitNo description
PfamPF000465.1E-1748100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-2049108IPR009057Homeodomain-like
PRINTSPR000316.8E-67382IPR000047Helix-turn-helix motif
PROSITE patternPS00027077100IPR017970Homeobox, conserved site
PRINTSPR000316.8E-68298IPR000047Helix-turn-helix motif
PfamPF021836.6E-18102143IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MFGEEEYYSS PPNSPDRYQS SSSTTSTTTT TTNPIRKKNN KNGNNYSKRR FTDEQIKSLE  60
SIFESETRLE PRKKVQLAKE LGLQPRQVAI WFQNKRARWK SKQLERDYGI LRANYNRLAS  120
RFESLKKEKQ ALAAQLQKLN ELMTENPRTE ETGHAETTYN SSEGESDNGV KDEKISLELK  180
AQSERERVGF IYEAENDSSI KVEYFGAEEA KLMSMVGGDG SLTSQEDWGS LDSDGVLFHD  240
QSTTDYQWWE FWT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030214
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297903e-76EU829790.1 Linum usitatissimum clone LU0012B03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529960.21e-83LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-7
SwissprotP468976e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0A7CB712e-84A0A0A7CB71_JATCU; Homeobox 12
STRINGLus100302140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-65homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]