PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030261
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 211aa    MW: 23481.1 Da    PI: 8.0654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030261genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1970121356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ykGVr+++ +g+++AeIrdp+ n+  +r +lg++  +e+Aa a+++a+ +l+g+
  Lus10030261  70 YKGVRRRP-WGKYAAEIRDPKRNN-GARMWLGTYENPEDAALAYDRAAFRLRGA 121
                  9*******.**********87754.5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-2969129IPR001471AP2/ERF domain
SMARTSM003809.0E-3369134IPR001471AP2/ERF domain
PROSITE profilePS5103223.23569128IPR001471AP2/ERF domain
CDDcd000182.13E-2869130No hitNo description
SuperFamilySSF541716.41E-2169129IPR016177DNA-binding domain
PfamPF008472.8E-1270120IPR001471AP2/ERF domain
PRINTSPR003675.2E-137081IPR001471AP2/ERF domain
PRINTSPR003675.2E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MESLESIRQH LFDDDSLTDH SAPPPFLHSR SLSFDGVISG AANWSDILSQ VDSKPPPPPP  60
VVPKKASGNY KGVRRRPWGK YAAEIRDPKR NNGARMWLGT YENPEDAALA YDRAAFRLRG  120
AKAKLNFPHL CTTTDDDNYE PVRVTASRKR QRCSRGDEES PPSWASSPML SFSGSENDSS  180
SGGKRRLTDL GLNVEKCWDW DQEYIMPRGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2669128563ATERF1
3gcc_A7e-2669128563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.11e-40ethylene-responsive transcription factor 13
TrEMBLU5FRU22e-39U5FRU2_POPTR; Uncharacterized protein
STRINGLus100302611e-154(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13