PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030490
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 104aa    MW: 11362.8 Da    PI: 9.3744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030490genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.2e-0827701454
                 HHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54
                 d+i + +++L++l+P+a    + + +K s + +L+++++YIk+L
  Lus10030490 27 DQIIDLISKLQRLVPEAHstsRCSRGKGSTSKVLQETCNYIKEL 70
                 578899**********6669989999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.8611370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-52770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-82884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-72988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MPSTRRSSSS RSRHSTTTTR PNVISDDQII DLISKLQRLV PEAHSTSRCS RGKGSTSKVL  60
QETCNYIKEL NKQVDDLSGK LSELLASIDS DSDQAAIIRS LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628588.11e-28transcription factor PRE6-like
SwissprotQ9LJX15e-29PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9I4F94e-28A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGLus100304903e-67(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-29bHLH family protein