PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030657

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YC

Protein Properties

Length: 147aa MW: 16442.6 Da PI: 9.1497

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030657	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.2	2.7e-16	6	96	9	99
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivprd 99 q+e+ ++++e+P r++ki++ d+dv+++++ea +++++ elf+ l+ +s a e+kr+ +k + aav+r + + dfl++ p++ Lus10030657 6 QVEE-VTIQQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSVEVASEKKRKIVKIEHLRAAVQRHQpTSDFLLESLPTQ 96 3333.347899**************************************************************9976489**999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.68E-17	11	82	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.1E-19	13	80	IPR009072	Histone-fold
Pfam	PF00808	1.3E-19	16	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MAEEEQVEEV TIQQQEFPNG RVRKIMRIDK DVNKVTSEAL FVVARSTELF LRFLAEKSVE 60 VASEKKRKIV KIEHLRAAVQ RHQPTSDFLL ESLPTQTQSQ EETGGGAAAR LPREVTPKPM 120 PAGTRRIDDF FGKFTSRAST SAENQG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030657

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021639800.1	1e-51	nuclear transcription factor Y subunit C-8-like
Refseq	XP_021639835.1	1e-51	nuclear transcription factor Y subunit C-8-like
TrEMBL	A0A2N9HE56	5e-50	A0A2N9HE56_FAGSY; Uncharacterized protein
STRING	Lus10030657	1e-101	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	9e-45	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Lus10030657