PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030679
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 250aa    MW: 28370.1 Da    PI: 9.5277
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer45.41.9e-141332960
  ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreveee 60
                 mps++++ +++++l+CaACgCHRnFHRre++++
  Lus10030679  1 MPSPNSTpSDPTSLRCAACGCHRNFHRREPDDN 33
                 6777788899*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.812129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-10530IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-61438IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-26114189IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16114188IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-22127184IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPSPNSTPSD PTSLRCAACG CHRNFHRREP DDNNTNQAPP LLHPPPPPPP PQLIEYQPHH  60
RHHPLPPPLP PHRHHEQRSP NSASPPPISS SYYPSAPRML MALSGENNNN NNKNNNVTRS  120
DPGASSRKRH RTKFSQIQKE QMYEFAERVG WKMVKSDEEL VKEFCNQVKV DKGVLKVWMH  180
NNKNTFGKQQ HRVISSHDHN HNDNSVHHHQ LSNNNQNNGD DLMNHNNHQQ NQNQRLFGSD  240
NHAGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-161261851675ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084702.11e-66zinc-finger homeodomain protein 9
TrEMBLA0A200QF087e-58A0A200QF08_9MAGN; ZF-HD homeobox protein
STRINGLus100306790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-34homeobox protein 34