PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030744
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 687aa    MW: 76263.7 Da    PI: 5.3587
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030744genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.61.9e-26449499252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  e +isle+l+++Fs+++kdAA +Lgvc T+LKriCRq+GI RWP+Rk+k++
  Lus10030744 449 ERRISLEVLRQHFSGTLKDAAISLGVCSTTLKRICRQHGITRWPSRKLKKV 499
                  789**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.836438519IPR003035RWP-RK domain
PfamPF020429.9E-25452499IPR003035RWP-RK domain
SuperFamilySSF542779.53E-22591679No hitNo description
SMARTSM006662.2E-22597680IPR000270PB1 domain
PROSITE profilePS5174525.183597680IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.1E-21598676No hitNo description
CDDcd064072.20E-38599678No hitNo description
PfamPF005641.5E-18599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDGSWQSGMM LGSQSVMDSD YIDDFLLDGS WFEATDVSEF LNYSPSNHNL GPTSNDADTS  60
AATTSQTNNE ENPSSAISVK DRLTGAIGCI RDLINDKDVL VQIWVPMEEM GRRVLTTKDQ  120
PFALDGGLAN YRDISTIYQF SAEEESDFSS MPGRVFLAQV PEWSPDVQLF TSEECPRADH  180
ARQYNVRGTL AVPVFEQNSE ICLGVVEILT TRRGNKYQSE LEKVSKALEA FDLRSCGTPI  240
SQTIKPTTDL AYKAALPEIK QVLKTACETH ELPLAQTWIP CTIQHQNTQH HPDSNCPQHC  300
LSTVEEACIT RNPNVKDFHK ACSEQHLLKG QGVAGKALAT NEPCFSSDIT RYSKAEYPLS  360
QIARVFGLCG AVAIRLRSTE IAGEADFVLE FFLPVDCRTL DEQHRMLNSL SIVVGEASRT  420
LRVVTDEELE CEKGWKLGKS VERKRIKAER RISLEVLRQH FSGTLKDAAI SLGVCSTTLK  480
RICRQHGITR WPSRKLKKVG HSLKKLQVVM DSVEGTSGSL HINSFYTNFP NLDSNNPPEP  540
PSIIITQPDH NASKLKPTSS PSSCSQSYAS SADQLPARSP AGEEQGNAVS KNSSNRVQRV  600
KVAYGDEIVR FRISSSWGYR DLLVEIGRRF GIEEMKKFDV KYLDDDSEWV QLTCDEDLEE  660
CVEVCHASVN QTVKLLLQVS SRGSSD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030744
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653422.10.0protein NLP4-like
SwissprotQ9LE381e-138NLP4_ARATH; Protein NLP4
TrEMBLA0A397YSC20.0A0A397YSC2_BRACM; Uncharacterized protein
STRINGLus100307440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.21e-135Nin-like family protein