PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030792
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 465aa    MW: 51995.8 Da    PI: 8.8932
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030792genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-1562121155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Lus10030792  62 SRFRGVSRHRWTGRYEAHLWDkASWNPtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 121
                  789******************887854566447*************************97 PP
2AP256.19.4e-18164215155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Lus10030792 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 215
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1262121IPR001471AP2/ERF domain
CDDcd000188.87E-1962131No hitNo description
SuperFamilySSF541712.29E-1662131IPR016177DNA-binding domain
SMARTSM003801.0E-2363135IPR001471AP2/ERF domain
PROSITE profilePS5103219.75763129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1563130IPR001471AP2/ERF domain
PRINTSPR003674.0E-56475IPR001471AP2/ERF domain
PfamPF008473.4E-13164215IPR001471AP2/ERF domain
CDDcd000181.65E-24164225No hitNo description
SuperFamilySSF541711.37E-17164225IPR016177DNA-binding domain
SMARTSM003802.7E-25165229IPR001471AP2/ERF domain
PROSITE profilePS5103218.874165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17165224IPR001471AP2/ERF domain
PRINTSPR003674.0E-5205225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEMNIPEVKR RFGSVEDVAR LEEGKFPIRK RRRRSPVSCS GANNQAAGTT TTTAPIVVKR  60
SSRFRGVSRH RWTGRYEAHL WDKASWNPTQ KKKGKQVYLG AYDEEESAAR AYDLAALKYW  120
GLAAFTNFPI SDYESELGIM GNVTKEEYLA SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA  180
RIGRVFGNKY LYLGTYGTQE EAARAYDIAA IEYRGINAVT NFELSTYIRW LKPESDSINP  240
VNPVAQQQQQ ESHESKLDLR SFTSMTGSCP PTTMATYFPP DRTQPQQQPN NQILGSNLRI  300
LDNLNENPLE QDLFKNSNRS LSLSSSSSSL ASSTTTSPSA LGLLFKSSVF KDLVEKNLFN  360
NNTNNDKNDG ESEELKNFQK MPTFFGSHKQ ELVDDDQEEE DVFGNGIGHC RSSLMMYPSS  420
INSNEKEVAG LPNLDLLPLF SSRGGGGGGQ SFWDGSLNIP SSFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12832RKRRR
22834RKRRRRS
38795PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030792
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775800.11e-133AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9WPR51e-132A0A2C9WPR5_MANES; Uncharacterized protein
STRINGLus100307920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.13e-77AP2 family protein