PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030800
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30385.9 Da    PI: 4.4071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030800genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-1864120157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  r+k++++t +q++ Le+ Fe ++++  +++ +LAk+lgL  rqV +WFqNrRa+ k+
  Lus10030800  64 RCKKRRLTVSQVQFLESSFETENKLEPDRKVQLAKELGLHPRQVAIWFQNRRARFKN 120
                  678889************************************************995 PP
2HD-ZIP_I/II122.61.9e-3966155291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrl+  qv++LE+sFe+e+kLep+rKv+la+eLgl+prqva+WFqnrRAR+k+kqlEkd+++L++++d+lke+ ++L +e+++L+++ 
  Lus10030800  66 KKRRLTVSQVQFLESSFETENKLEPDRKVQLAKELGLHPRQVAIWFQNRRARFKNKQLEKDFDSLRSRFDRLKEDYDSLLQEKQSLETQA 155
                  9*************************************************************************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1956123IPR009057Homeodomain-like
PROSITE profilePS5007117.34661121IPR001356Homeobox domain
PfamPF000467.7E-1664119IPR001356Homeobox domain
SMARTSM003892.9E-1864125IPR001356Homeobox domain
CDDcd000863.70E-1666122No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1968128IPR009057Homeodomain-like
PRINTSPR000315.5E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6101117IPR000047Helix-turn-helix motif
PfamPF021832.9E-14121162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MATGSGINGF DLLSCGHLWI PSPALNLQGL DNVGGGEVND GEFCSPHRRE ELCDEDFELG  60
SSPRCKKRRL TVSQVQFLES SFETENKLEP DRKVQLAKEL GLHPRQVAIW FQNRRARFKN  120
KQLEKDFDSL RSRFDRLKED YDSLLQEKQS LETQANSLKE KLDRTEDFKT APFQVPMSQL  180
AIVSPEAKKS EANYSVSPHT VLMDPNESSQ VFEENQSDYF SQDEDEFLMT NCFRNDDESL  240
PAVVFEFPVE DQPFNLVLDL MNWM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520146.14e-65homeobox-leucine zipper protein HAT5
TrEMBLB9S2C79e-64B9S2C7_RICCO; Homeobox protein, putative
STRINGLus100308000.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-39homeobox 1