PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030807
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 261aa    MW: 28702.8 Da    PI: 6.9542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030807genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10143190455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lus10030807 143 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 190
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17137207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-9137194No hitNo description
Gene3DG3DSA:4.10.280.101.2E-17139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-7143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPRGLMNDE SFNLAEIWQF PLNGSGRGQF GQSLAHFADS TTGRDSDLVN LESRGGLRKR  60
LNLENESGKG VSTSNGNGSG NGLSESDGKR LKRSASRDDN CESKVETEEL SSGKPVEQKG  120
QPSEPPKQDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN KVIGKALVLD  180
EIINYVQSLQ RQVEFLSMKL EAVNSRVTPG IDVYPSKDFG QQTFDTSGMA YGSQTTREYS  240
RGASPEWLHM QIGSGFERTS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616639.11e-129transcription factor BHLH089-like
SwissprotQ69WS37e-80BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2C9WPL11e-128A0A2C9WPL1_MANES; Uncharacterized protein
STRINGLus100308070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-97BIG PETAL P