PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030832
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 149aa    MW: 16559.8 Da    PI: 9.1263
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030832genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.88.7e-179961198
        NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                 e ++ ++++e+P  r++ki++ d+dv+++++ea  +++++ elf+  l+ +s   a e+kr+ +k   + aav+r + + dfl+d  p 
  Lus10030832  9 E-DATIRQQEFPNGRVRKIMRIDKDVNKVTSEALFVVARSTELFLRFLAEKSAEVASEKKRKIVKIEHLRAAVKRHQpTSDFLLDSLPA 96
                 2.345789******************************************************************976489*****9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.2E-191381IPR009072Histone-fold
SuperFamilySSF471137.21E-171383IPR009072Histone-fold
PfamPF008081.2E-191780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVEEEEQVED ATIRQQEFPN GRVRKIMRID KDVNKVTSEA LFVVARSTEL FLRFLAEKSA  60
EVASEKKRKI VKIEHLRAAV KRHQPTSDFL LDSLPAPILQ SQEDTGDGAA ARLPREVAPK  120
LLPAGTRRID DFFGKSTSRA STSAENQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514923.11e-51negative cofactor 2 complex subunit alpha
TrEMBLB9RMF42e-50B9RMF4_RICCO; DNA binding protein, putative
STRINGLus100308321e-102(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-47nuclear factor Y, subunit C13