PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10030892

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

YABBY

Protein Properties

Length: 105aa MW: 12065.7 Da PI: 8.9105

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10030892	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	100.4	3.9e-31	7	97	71	159
YABBY 71 lleelkveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++e++++ ++++ s +e++ s ss l +enede++ r ++++PPekrqr+Psaynrfikeei+r+ka+nP++ h+eafs+aakn Lus10030892 7 VKEQKEDGNHQVGSLYEEKGSLLFMDSSPPLlvtsDENEDEDINR--KINKPPEKRQRAPSAYNRFIKEEIKRLKAENPKMVHKEAFSMAAKN 97 556666777788888888888877777777777767788888887..899******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-27	38	98	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-7	50	96	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.9E-5	52	96	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MTILTIVKEQ KEDGNHQVGS LYEEKGSLLF MDSSPPLLVT SDENEDEDIN RKINKPPEKR 60 QRAPSAYNRF IKEEIKRLKA ENPKMVHKEA FSMAAKNVNR NFYV*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10030892

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010498850.1	2e-26	PREDICTED: axial regulator YABBY 4-like isoform X1
Swissprot	Q9LDT3	3e-27	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A218XWX3	2e-26	A0A218XWX3_PUNGR; Uncharacterized protein
TrEMBL	A0A2I0IFA8	2e-26	A0A2I0IFA8_PUNGR; Uncharacterized protein
STRING	Lus10030892	4e-71	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-29	YABBY family protein

Link Out ? help Back to Top
Phytozome	Lus10030892

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]