PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030935
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 329aa    MW: 36294.8 Da    PI: 8.345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030935genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +++++G+g Wk+I +         +R+  ++k++w++
      Lus10030935  5 KQKWTAEEEEALRAGIAKHGTGKWKLIQQDPEfnpylSTRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.788161IPR017930Myb domain
SuperFamilySSF466893.37E-16259IPR009057Homeodomain-like
SMARTSM007171.8E-9459IPR001005SANT/Myb domain
PfamPF002499.3E-10555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14557IPR009057Homeodomain-like
CDDcd116601.82E-20657No hitNo description
SMARTSM005260.0032126193IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150414.823128198IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.63E-6131204IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-6131199IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGI AKHGTGKWKL IQQDPEFNPY LSTRSNIDLK DKWRNIIVTP  60
GEKSRTPKTK VPTADDVVST PLPISQVLDA PPAPIVAAPV PAPVPTPAIL PAVTTDEVAK  120
IAPVDVKICS KYDPMIFEAI TALSCNETSV VDINAIIGFV ERRHELPQNG RKQVTSRLRV  180
LVNREKLEKV QNSYRFKEST PTVVAKAPSP KKQVEQAKGL QRSDSATPIE TLEEAARAAA  240
SIIAEAETKA VRAAEKVHEL EIASILREET ESILLFSQQI YDRCKSESIY SFYHTTYSNF  300
CVFCVRPKVP KSCIFLYVAG MQGETIVI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8871283e-46HQ887128.1 Linum usitatissimum clone GMU2AYZ01AG523 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650170.12e-76telomere repeat-binding factor 4-like
STRINGLus100309350.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.25e-44MYB_related family protein