PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10030967
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 241aa    MW: 26130.5 Da    PI: 5.7907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10030967genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001290112123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C + F++   L  H+++H
  Lus10030967  90 YTCTFCRREFRSAQALGGHMNVH 112
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-687116No hitNo description
PROSITE profilePS5015711.15790117IPR007087Zinc finger, C2H2
SMARTSM003550.006690112IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-590113IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASELGFLAL AHLQNDNDQN QNQNHNQKQL GRRGHHQTAQ PQLGNNSGAA STWVWNPKRT  60
EEAEEEEEEE SWEVRAFEED AGNVWPPRSY TCTFCRREFR SAQALGGHMN VHRRDRAKLH  120
HPLPLPRPGV PPSTAVASSS ASSSSTYVIP TPEYSSSTGG LCLLYQFPNP NNHTVGGGGG  180
GGTFNPPPNV NKIAWGAATE GGNSPSTVLS MTPSTSSCPP NSQPCYSVRD EEELDLELRL  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-1385112229superman protein
2l1o_A5e-1385112229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10030967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100309671e-178(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-20C2H2 family protein