PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031087
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family DBB
Protein Properties Length: 200aa    MW: 21982.6 Da    PI: 5.9297
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031087genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.4e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC+ C ++ H
  Lus10031087  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                 7**************************998 PP
2zf-B_box29.31.8e-095391337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                  ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Lus10031087 53 VPRCDICENAPAFFYCEVDGTSLCLQCDMVVHVGgkrtH 91
                 689**************************9996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.3E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000213.87E-7345No hitNo description
PfamPF006434.5E-6334IPR000315B-box-type zinc finger
SMARTSM003366.1E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006435.4E-85391IPR000315B-box-type zinc finger
CDDcd000212.68E-85484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHLCNKLAS RHVRVGLADP SAVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MVVHVGGKRT HGRYLLLRQR VEFPGDKPGQ VEDQNGTRRD  120
QRQQPDDAKR ENQQDHSVPP IPATENHSGA ANGVVENNLI DLNSRPQRIQ GEDSNNQQGN  180
FFSVFYFLVG KTQLPNLGN*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031087
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313009.12e-97B-box zinc finger protein 19 isoform X1
RefseqXP_024463705.12e-97B-box zinc finger protein 19 isoform X1
RefseqXP_024463706.12e-97B-box zinc finger protein 19 isoform X2
SwissprotC0SVM57e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3N7FND94e-96A0A3N7FND9_POPTR; Uncharacterized protein
STRINGLus100310871e-146(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-78DBB family protein