PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031166
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 256aa    MW: 28144.8 Da    PI: 9.4962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073101123123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC +C+k F +   L  H  +H
  Lus10031166 101 YKCDKCPKKFATYQALGGHHANH 123
                  9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-799123No hitNo description
PfamPF139123.0E-7100124IPR007087Zinc finger, C2H2
SMARTSM003550.099101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-7190217No hitNo description
SMARTSM003550.086195217IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-7195217IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18195222IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTRLIKHLDS KPNSKPSPKN SKLAMQSPQA PRLTTYHGPT AAITKPRTKR WGRISTILTK  60
APTTSPLLSE VEVAAQSLMT MYHHDLSDEV VEVKEADEKY YKCDKCPKKF ATYQALGGHH  120
ANHNKNDVAS SKLVTLIDDD DEDYKGKAEE KDDDDDEVVI LGSTINKNVV TGRGGSGSGG  180
ACNTRKTKKK RKREFKCPFC IRVFRSGQAL GGHKKVHFSD HKLSNSTTPA AMATEPTTVV  240
RNSEIDLNFS TSVDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RKTKKKRKR
2184193RKTKKKRKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031166
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100311660.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-12C2H2-like zinc finger protein