PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031255

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 186aa MW: 20165.9 Da PI: 5.3087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031255	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	124	169	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Lus10031255 124 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 169 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	118	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-16	120	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-14	122	173	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-10	124	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-13	124	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSPIAEVVDT KSIVSESNRP ESSSFGDANA GGGEYVTGFP WDDPPGVMSG GKGGLSEDDR 60 TFSGLNESSQ NVEGGGNNPP MLAHHLSLPK TAAEMSALEK LLHLQDSVPC KIRAKRGFAT 120 HPRSIAERVR RTRISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKDLQT QVKVCMDLML 180 ILPEV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031255

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633994.1	4e-75	transcription factor bHLH122
Swissprot	Q66GR3	8e-52	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2C9UIT4	1e-73	A0A2C9UIT4_MANES; Uncharacterized protein
STRING	Lus10031255	1e-135	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10031255

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]