PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031315

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ZF-HD

Protein Properties

Length: 207aa MW: 22900.1 Da PI: 8.3839

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031315	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.1	4.9e-29	8	66	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegt...aaalkCaACgCHRnFHRrevee 59 +YkeCl+NhAaslG++a+DGCgEf+ s +++++ a++l+CaACgCHRnFHR+ +++ Lus10031315 8 EVYKECLRNHAASLGSYATDGCGEFTLSFSSSSSssvATSLQCAACGCHRNFHRKVNNN 66 68*********************98865553334589**************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.7E-24	9	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	10	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-24	10	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.341	10	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.76E-14	96	168	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-26	102	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.9E-28	109	168	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEGEVDTEVY KECLRNHAAS LGSYATDGCG EFTLSFSSSS SSSVATSLQC AACGCHRNFH 60 RKVNNNHNTN LLLTTAAIEQ DHQMASVVRK NNMSSYRGDL GSGLGSSGKR HRTKFTTEQK 120 EKMTEFAEKI GWRLTRVANK EEDEVERFCR GVGISRQVFK VWMHNHKNSS SSSTTNTTTN 180 NNYDSSNDYH NNVASFSTRT SSLTTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	2e-20	109	173	18	79	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031315

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035531.1	5e-62	PREDICTED: zinc-finger homeodomain protein 4-like
Swissprot	Q9LHF0	7e-39	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A2K1Y8K4	1e-60	A0A2K1Y8K4_POPTR; Uncharacterized protein
STRING	Lus10031315	1e-151	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	7e-32	homeobox protein 30

Link Out ? help Back to Top
Phytozome	Lus10031315

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]