PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031439

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C3H

Protein Properties

Length: 146aa MW: 15872.6 Da PI: 8.2144

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031439	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.3e-10	58	78	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f tG+C+yGd+Ck+ H Lus10031439 58 LCNRFVNTGFCPYGDSCKYLH 78 8******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.27E-12	4	49	No hit	No description
Pfam	PF06220	2.3E-7	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	13.375	53	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	54	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0037	55	80	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-8	58	78	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-8	58	78	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MPLGKYHCDY CDKEFQDTPV ARKRHLHSSS HLRAKSLWYN SFPSSSSASN APTTTVGLCN 60 RFVNTGFCPY GDSCKYLHLN SNTATSQNYN SAQAAGTLSS SFQSGPSSVH VMPNSMGGWW 120 GNLPPSLMPP PEGGYRSDLP YLDWG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031439

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008246287.1	3e-50	PREDICTED: zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	2e-36	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A067JTM5	1e-49	A0A067JTM5_JATCU; Uncharacterized protein
STRING	Lus10031439	1e-104	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	5e-44	C3H family protein

Link Out ? help Back to Top
Phytozome	Lus10031439

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]