PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031464
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 165aa    MW: 17879.7 Da    PI: 10.5923
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031464genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.4e-182961133
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                 C+ C++t+TplWR gp g+k+LCnaCG++y+kk
  Lus10031464 29 CRDCKATSTPLWRFGPAGPKSLCNACGIRYAKK 61
                 *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-132165No hitNo description
PROSITE profilePS5011412.1762358IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-142374IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.4E-162762IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.62E-122874No hitNo description
PfamPF003203.8E-162962IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKVLQNSTEK SLVFGDEEQK KEKEMQKSCR DCKATSTPLW RFGPAGPKSL CNACGIRYAK  60
KIRPDKKQAN SPSPPQQIAS SSSAAGTTSD EPSSSPTGPL KVRVVYSSPK GGVMFRRSLL  120
RAPPTPAMVV KKQKYGKRKV RKLTEEEVQA ARCLVALSSC SDFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100314641e-116(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-13GATA transcription factor 23