PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031505
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 982aa    MW: 111033 Da    PI: 6.776
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031505genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA22.63.4e-07886904119
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRq 19 
                  +ep++VNaKQy++Il R++
  Lus10031505 886 EEPVFVNAKQYHGILSRKA 904
                  69***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003082.0E-6022165IPR001024PLAT/LH2 domain
SuperFamilySSF497235.47E-5422168IPR001024PLAT/LH2 domain
Gene3DG3DSA:2.60.60.209.5E-6125177IPR001024PLAT/LH2 domain
CDDcd017518.41E-5226165No hitNo description
PROSITE profilePS5009521.03339164IPR001024PLAT/LH2 domain
PfamPF014773.9E-1863163IPR001024PLAT/LH2 domain
PRINTSPR004686.2E-92134152IPR001246Lipoxygenase, plant
PRINTSPR004686.2E-92160181IPR001246Lipoxygenase, plant
PROSITE profilePS51393297.649167872IPR013819Lipoxygenase, C-terminal
SuperFamilySSF484842.09E-272169870IPR013819Lipoxygenase, C-terminal
PfamPF003050177855IPR013819Lipoxygenase, C-terminal
Gene3DG3DSA:4.10.375.101.4E-41178272No hitNo description
PRINTSPR004686.2E-92199215IPR001246Lipoxygenase, plant
PRINTSPR004686.2E-92232251IPR001246Lipoxygenase, plant
Gene3DG3DSA:4.10.372.101.3E-27292382IPR027433Lipoxygenase, domain 3
PRINTSPR004686.2E-92302323IPR001246Lipoxygenase, plant
PRINTSPR004686.2E-92351367IPR001246Lipoxygenase, plant
Gene3DG3DSA:3.10.450.603.9E-55384524No hitNo description
PRINTSPR004686.2E-92390409IPR001246Lipoxygenase, plant
PRINTSPR004686.2E-92457481IPR001246Lipoxygenase, plant
PRINTSPR000873.9E-24510527IPR013819Lipoxygenase, C-terminal
Gene3DG3DSA:1.20.245.107.7E-141526870No hitNo description
PROSITE patternPS007110528542IPR020833Lipoxygenase, iron binding site
PRINTSPR000873.9E-24528545IPR013819Lipoxygenase, C-terminal
PRINTSPR000873.9E-24548568IPR013819Lipoxygenase, C-terminal
PROSITE patternPS000810555565IPR020834Lipoxygenase, conserved site
PRINTSPR004686.2E-92785799IPR001246Lipoxygenase, plant
PROSITE profilePS511529.173885904IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MQKIIDCLSG HGNGAEKKRK QKKIKGTVVL MKKNVLDFND FNASILDRIH ELLGQRVSLQ  60
LISSVHADPK NGNTGRLGKA AYLENWIPTI APLTAGETSY TVTFDCDEQD DNPGGFLIKN  120
NHHNEFYLKS LTLEDIPGHG RIHFVCNSWV YPAKRYQKDR VFFTNKTYLP HETPLPLVKY  180
REEELVTLRG NGEGELQEWD RVYDYALYND LGNPDSDPKS ARPTLGGSVE YPYPRRGRTG  240
RPPSKSDPTV ESRVPLLMSL DIYVPRDERF GHLKMSDFLL NGLKAIVQFV KPELEVLCAE  300
NKNEFDSFEE ALKIYDGGVK LPGGPALDSL WKNVSLDIIK QIFHTDGERI LKYPLPEVIK  360
ESKTAWRTDE EFAREMLAGL NPVVIRLLQE FPPKSKLDPN VYGNQDSSVT EEHIKIGLNG  420
LTIAEAIKNN KLFILDHHDT LMPYLRRINE TPSTKTYATR TILFLQDDDT LKPLAIELSL  480
PHPDGDKLGS INKVYTPPLA DHHQEGSLED SIWQLAKAYV AVNDSGYHEL FTHWLNTHAV  540
IEPFIIATNR QLSVLHPIHK LLHPHFRDTM NINALGRQIL INGGGLVEAT LYPSKYSMEM  600
SSFIYKDWNF TEQAVPQDLK KRGMAVFDPN SKHGLRLLIK DYPYAVDGLD IWSAIRNWVS  660
DYTSLYYKSD ADIQRDSELQ SWWEELVEIG HGDKKHETWW PKMQTRSELI ESITTVIWIA  720
SALHASTNFG QYTYAGYLPN RPTTSRRFIP EEGSPEFEEL KTDPDRAFLR TVTARLQTLI  780
GISLIELLST HSSDEVYLGQ RETKEWTADS EAVAAFERFG DELAEVEKRI VERNGQVKLR  840
NRNGPVKVPY TLLFPTSEAG RTGKGIPNST CSTGRTTKAG WHAFVEEPVF VNAKQYHGIL  900
SRKATLCCLL KIHTCFIVQV RLPSNGTQKL IVTDLIAGFR DALICCLHFG LCLRSSCCSF  960
IPSALASSSC LLLYASQLVS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hu9_A0.02386911854LIPOXYGENASE-3
1ik3_A0.02386911854LIPOXYGENASE-3
1jnq_A0.02386911854lipoxygenase-3
1lnh_A0.02386911854LIPOXYGENASE-3
1n8q_A0.02386911854lipoxygenase-3
1no3_A0.02386911854Lipoxygenase-3
1rov_A0.02386911854Seed lipoxygenase-3
1rrh_A0.02386911854Seed lipoxygenase-3
1rrl_A0.02386911854Seed lipoxygenase-3
1rrl_B0.02386911854Seed lipoxygenase-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. May contribute to cell death during the hypersensitive response (HR) by the massive production of free fatty acid hydroperoxides. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031505
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated within 6 hours after pathogen infection, ethylene or jasmonate treatments. Not induced by wounding. {ECO:0000269|PubMed:11080289}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268178.10.0lipoxygenase
SwissprotQ431910.0LOX15_SOLTU; Probable linoleate 9S-lipoxygenase 5
TrEMBLF6HZ100.0F6HZ10_VITVI; Lipoxygenase
STRINGLus100315050.0(Linum usitatissimum)
Publications ? help Back to Top
  1. Kolomiets MV,Chen H,Gladon RJ,Braun EJ,Hannapel DJ
    A leaf lipoxygenase of potato induced specifically by pathogen infection.
    Plant Physiol., 2000. 124(3): p. 1121-30
    [PMID:11080289]