PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031527
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 171aa    MW: 19008.4 Da    PI: 9.3335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031527genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-116186227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++lC+++  +G+Ck+G +C+F H++
  Lus10031527 61 GQALCPNYITYGICKFGTSCRFDHPF 86
                 789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-45986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1735987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.02E-66187IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-76186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-46484IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPAFHEHRDL QIWIRLQVPS PKGEKNTTAA RVKTDEPPPL VGYQPHHQLH LHFNLVFAKQ  60
GQALCPNYIT YGICKFGTSC RFDHPFTGYP YNYSFAIPPP LPMLDSSMVT SYPRMVTSSP  120
SYNVYNGSAR NINQQHQMNN AGANNKKTTA PTPTPTTPPD ETTTNAAPPR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031527
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100315271e-124(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.25e-09zinc finger nuclease 3