PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031528
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 259aa    MW: 27897.2 Da    PI: 8.2509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031528genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.5e-096085126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++r+G C y ++C+++H+
  Lus10031528 60 PGEPDCIYYLRNGVCGYASNCRYNHP 85
                 5789*********************8 PP
2zf-CCCH37.92.9e-12109133327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++++tGtCkyG +C+F+H++
  Lus10031528 109 EPDCGYYLKTGTCKYGTTCRFHHPK 133
                  789********************96 PP
3zf-CCCH413.2e-13153178227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+f++rtG Ck+G+ CkF+H++
  Lus10031528 153 DEKPCSFYMRTGSCKFGGACKFHHPQ 178
                  5789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6525987IPR000571Zinc finger, CCCH-type
SMARTSM003560.00135986IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-66185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-56487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061106134IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5106133IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9109133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6111134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4112132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7150179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375151179IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6153178IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11153178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5155177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPDTNISGSN QKQQVKSNGG SNHSSDNIEE AIRRLKIQDN HDQNGGGGDV TEPGSYPDRP  60
GEPDCIYYLR NGVCGYASNC RYNHPNQHAP PLAKGSKGGD QELPERAGEP DCGYYLKTGT  120
CKYGTTCRFH HPKDRNGAGP VSYNRLGLPM RQDEKPCSFY MRTGSCKFGG ACKFHHPQPP  180
PAAAPLEPGG IPLSGLSTYG TSTGSPMIPR LPYMSAPPRF DSTPAFAPVY ISPPSQGGWN  240
NYVIRVASSL CLMSLFQI*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.12e-83zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD93e-62C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9SSJ95e-82B9SSJ9_RICCO; Zinc finger protein, putative
STRINGLus100315280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-60C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]