PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031595
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 212aa    MW: 24181.3 Da    PI: 8.0718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031595genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.21.2e-09911434128
          NAM  34 ikevdiykv.ePwdLpk..kvkaeek...ewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgek 118
                  ++e d+y   ePw+L +  +++++++    +y F+k +kk+++ k+ +r +    g W+   +  +v++k     ++   g k+ + +  ++++++e+
  Lus10031595   9 VQESDLYGDkEPWELWRdhQIRSHREpeeAIYLFTKLKKKSKNAKNFERRIGncGGNWHGEDS-GNVFVKfrggdGSMWAGKKRKFKYE-NKKSEAEH 104
                  67778885449****6334444433333256***********999888854445899**8776.4555555666444558899999886.888899** PP

          NAM 119 tdWvmheyrl 128
                   +W++ e+r+
  Lus10031595 105 GKWLLSEFRV 114
                  ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.9711133IPR003441NAC domain
SuperFamilySSF1019414.45E-717118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTPEQCYPVQ ESDLYGDKEP WELWRDHQIR SHREPEEAIY LFTKLKKKSK NAKNFERRIG  60
NCGGNWHGED SGNVFVKFRG GDGSMWAGKK RKFKYENKKS EAEHGKWLLS EFRVENVESE  120
SSFETAICMM KINGSPFAEK ELGKMMPRKR KLDDILDDFL HRGLEFPGPA LKKLQLDRKQ  180
SNSVGAAVPI VIQNETAAFQ ASGDGYDSVS E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151PRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031595
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100315951e-157(Linum usitatissimum)