PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031607
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 262aa    MW: 29570 Da    PI: 5.0418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031607genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +++++G  +W+  ++  g++R++k+c++rw +yl
      Lus10031607 14 KGTWTAEEDRKLIAYITRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding45.91.3e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + eE+e  +++++ lG++ W+ Ia ++  gR+++++k++w++
      Lus10031607  67 RGNYSLEEEETVIRLHAALGNR-WSVIATHLH-GRSDNEIKNHWHS 110
                      8999******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21663IPR009057Homeodomain-like
PROSITE profilePS5129414.638961IPR017930Myb domain
SuperFamilySSF466891.15E-2711108IPR009057Homeodomain-like
SMARTSM007172.0E-101363IPR001005SANT/Myb domain
PfamPF002493.7E-131461IPR001005SANT/Myb domain
CDDcd001677.33E-91661No hitNo description
PROSITE profilePS5129422.11262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2364115IPR009057Homeodomain-like
SMARTSM007171.5E-1366114IPR001005SANT/Myb domain
PfamPF002493.6E-1367110IPR001005SANT/Myb domain
CDDcd001673.15E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRTPSCDEN GMRKGTWTAE EDRKLIAYIT RYGCWNWRQL PKFAGLKRCG KSCRLRWMNY  60
LRPDLKRGNY SLEEEETVIR LHAALGNRWS VIATHLHGRS DNEIKNHWHS SLKKRATGKS  120
QSPASSSSTQ SSEYSEVKEE GLDKPQMEIP DGVAVLESSN LSIFSPVATL PSPQSDAMSS  180
SSPFSPSLFS FDNVAASSAG CSDVLSYLSS FVGMWETNEA YNNWPEPESE PMVTTDNYWY  240
MPSEVFESLT VEEELQFPLF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031607
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689975.11e-75transcription factor MYB30-like
TrEMBLW9RAQ08e-71W9RAQ0_9ROSA; Myb-related protein Myb4
STRINGLus100316070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-56myb domain protein 41