PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031655
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 184aa    MW: 19420.8 Da    PI: 4.9692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031655genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-152875355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +  +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a+  a+ +l+g
  Lus10031655 28 YRGVRIR--SGKWVSEIREPKK---TSRIWLGTYPTPEMAAAAYNVAAIALKG 75
                 9***965..5*********854...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-182685IPR016177DNA-binding domain
PROSITE profilePS5103219.5462783IPR001471AP2/ERF domain
SMARTSM003802.8E-262789IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-252784IPR001471AP2/ERF domain
CDDcd000188.55E-172885No hitNo description
PfamPF008471.5E-82875IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAANKPDPPP PPQPTQPPPP SSSTPSMYRG VRIRSGKWVS EIREPKKTSR IWLGTYPTPE  60
MAAAAYNVAA IALKGRETPL NFPASIGSYP TPASTSASDI RAAAHTAAAA FVAPKSAHGQ  120
ASGEGSMRNP EEYMDVEDIL DMPNLLVEMA GGMMVSPPRM GDTASYGDSP DNSEGESLWS  180
YDK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737007.14e-59PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9CAN94e-42ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A1U8NDA29e-58A0A1U8NDA2_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGLus100316551e-129(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-38ERF family protein