PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031676
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 235aa    MW: 26119.5 Da    PI: 7.915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031676genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.1e-1077127355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ah  +Er+RR+++ +    Lr+llP+      ++K   ++  + Av+YIk+Lq
  Lus10031676  77 IAHRGVERQRRKEMADLHGSLRSLLPShY---IKGKRAASDQMQAAVDYIKELQ 127
                  58999**********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.11274126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.14E-1177146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-978142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-778127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-678128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MFPHNSKQIS FDANDNNQEE EDDPLIFFPS DFTSPFTFNP PQGHLIFQQP PPPPPPPAAF  60
QDPPPPLPPP TQNLRNIAHR GVERQRRKEM ADLHGSLRSL LPSHYIKGKR AASDQMQAAV  120
DYIKELQTRT KQLGVKRDEL KTNAVSNTIY AVANTNHEEA TSSSRQANAG GAVVLVRRCL  180
IGMEVVINGS HGDHHQLSRV LKLLMDQGIN VVTIDSVRVN DRLIHTIQSE VTHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486RNIAHRGVERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10031676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9EN822e-40A0A2N9EN82_FAGSY; Uncharacterized protein
STRINGLus100316761e-173(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-35bHLH family protein