PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032004
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 259aa    MW: 28817.6 Da    PI: 8.2335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.43.1e-28141381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlsk 95 
                  lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+++ d  ++ P+  p      +++ yfF+k d +++    +n+    k gyWk+tgk ++++++
  Lus10032004  14 LPIGYRFRPTDEELIVHYLRRKVFGLPLPA-SVIPDLnDPSTALPSGNP------SEKRYFFCKGDDHNR----SNKivEEKGGYWKHTGKARHIFAA 100
                  699***************************.899998455555555444......4678*****999764....344214569*************99 PP

          NAM  96 ...kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +++lvg++++Lvf   +g+++k +  +Wvmhe+ l
  Lus10032004 101 sssNNQLVGIRRSLVFQthNGKRNKNQTHKWVMHEFCL 138
                  8878888*********8667899999999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-338166IPR003441NAC domain
PROSITE profilePS5100535.56714166IPR003441NAC domain
PfamPF023655.2E-2215137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEKQSMNGGG GIKLPIGYRF RPTDEELIVH YLRRKVFGLP LPASVIPDLN DPSTALPSGN  60
PSEKRYFFCK GDDHNRSNKI VEEKGGYWKH TGKARHIFAA SSSNNQLVGI RRSLVFQTHN  120
GKRNKNQTHK WVMHEFCLVG FVTIPFTNQI SMVKVGEWVL CSVLQKKRRA STNANKKKLI  180
SRCSTSPNPV RDQDSMDFRV DELSDAGPSC DDHEEEEEEE GKVGSLSGIT ELSSTKSSSS  240
SGLLLVEEED ITVHPMLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-181217015169NO APICAL MERISTEM PROTEIN
1ut4_B1e-181217015169NO APICAL MERISTEM PROTEIN
1ut7_A1e-181217015169NO APICAL MERISTEM PROTEIN
1ut7_B1e-181217015169NO APICAL MERISTEM PROTEIN
3swm_A1e-181217018172NAC domain-containing protein 19
3swm_B1e-181217018172NAC domain-containing protein 19
3swm_C1e-181217018172NAC domain-containing protein 19
3swm_D1e-181217018172NAC domain-containing protein 19
3swp_A1e-181217018172NAC domain-containing protein 19
3swp_B1e-181217018172NAC domain-containing protein 19
3swp_C1e-181217018172NAC domain-containing protein 19
3swp_D1e-181217018172NAC domain-containing protein 19
4dul_A1e-181217015169NAC domain-containing protein 19
4dul_B1e-181217015169NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100320040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-31NAC domain containing protein 84