PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10032108

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 294aa MW: 31906.3 Da PI: 9.3638

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032108	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.6	3.3e-18	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r+ t+ kR++g++KK +ELS+LCd++++ i++++ + Lus10032108 11 IANDSARKATYKKRKKGLMKKVSELSTLCDIQACAIVYGPYD 52 89*************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.7E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.708	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-25	2	97	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.99E-21	2	86	No hit	No description
PRINTS	PR00404	3.3E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-17	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTRKKVKLAY IANDSARKAT YKKRKKGLMK KVSELSTLCD IQACAIVYGP YDTQPETWPS 60 TPAGVHQVLS RFRKVPQMEQ CKKMVNQEKF LGERIKKAAE QLRKQKRDND EKMVQNALFE 120 CLTGRISLQS LTLGDLDVIA RAVDQQIKDV DRKLTEIARK GGGGGGGGST TAANGVNNLE 180 GPLQMMTPAN GGGMVGPAKE EFMENVNDTL QRQLWFMEMM NSNAPAPLTA VEQQQMGFMG 240 GEMMMNNVAA EGGGGGGGGF GEGSSSNWVG NNGVINGNNN SNPFWSGNYH CYH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYIANDSARKATYKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032108

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006382260.2	1e-73	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	2e-53	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	U5GF69	6e-73	U5GF69_POPTR; Uncharacterized protein
STRING	Lus10032108	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-53	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Lus10032108

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]