PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032240
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family YABBY
Protein Properties Length: 243aa    MW: 27177.8 Da    PI: 7.6871
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.13.2e-64202044170
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...............qllaaeshldeslkeelleelkveeenlksnv 86 
                  +   eq+Cyv+Cn C+t+lavsvPs+s fk+vtvrCGhCt+ll vn++  +                  +++ +lde   ++ +++     +nl + +
  Lus10032240  20 QIPEEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNflptspspaiappfqLFSPTTTQLDEFSSNPNANTPSPPPQNLLMFN 117
                  56789*****************************************9988756666666666665444556666666666667777777777766655 PP

        YABBY  87 ekeesastsvssekl..senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   + +    + ++      ++++ e+pr+p  v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl
  Lus10032240 118 NQINDFGFQSAARFApdHNHQHLELPRPPLaVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIQFGL 204
                  54444333322222232444555889987679*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-6422204IPR006780YABBY protein
SuperFamilySSF470955.37E-9148198IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.2E-6152198IPR009071High mobility group box domain
CDDcd013903.89E-6158194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSMSSMTLSL DHHYQQQQQQ IPEEQLCYVH CNICDTVLAV SVPSSSWFKT VTVRCGHCTH  60
LLPVNMMRPN FLPTSPSPAI APPFQLFSPT TTQLDEFSSN PNANTPSPPP QNLLMFNNQI  120
NDFGFQSAAR FAPDHNHQHL ELPRPPLAVN RPPEKRQRVP SAYNRFIKEE IQRIKAENPD  180
ISHREAFSAA AKNWAHFPHI QFGLMPDQPL KKKANTLLHH PPQEAEGGFF SSANVGVAAA  240
PY*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032240
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666324.12e-80protein YABBY 4-like
SwissprotQ01JG22e-61YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-61YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A061G3I54e-77A0A061G3I5_THECC; Plant-specific transcription factor YABBY family protein
STRINGLus100322401e-180(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-61YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]