PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10032389

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 137aa MW: 15654.8 Da PI: 4.4501

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10032389	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1e-10	16	98	11	97
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l+ ++l+lp +f++++ g+ +++ tl + +We+++ + +s+ + ++GW+ F L g ++ Fk++g +ef +++vf Lus10032389 16 LQAKQLMLPMSFTRSYwGNAPPR---ATLLLPGRGRWEMEVFKDEQSRVWLQGAGWEAFSGFYSLAHGHILQFKYHGGTEF--FLRVF 98 34467*********7666555...8999999****7677776677779*******************987666..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-14	5	100	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.333	6	101	IPR003340	B3 DNA binding domain
SMART	SM01019	0.001	7	101	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-12	7	101	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-7	16	98	IPR003340	B3 DNA binding domain
CDD	cd10017	1.37E-8	19	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MARVVRFPKV VIGESLQAKQ LMLPMSFTRS YWGNAPPRAT LLLPGRGRWE MEVFKDEQSR 60 VWLQGAGWEA FSGFYSLAHG HILQFKYHGG TEFFLRVFAM NMSEIKYPPP DLTSLDQEDD 120 PVDDSDDEEE LPDEII*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10032389

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10032389	6e-97	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-11	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10032389