PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032498
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 212aa    MW: 23545.4 Da    PI: 6.0663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032498genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16108158255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr ++ +g+++AeIrdp+      r++lg+fg+  +Aa+a++ a+ +++g
  Lus10032498 108 KFRGVRKRP-WGKYAAEIRDPTRK--GSRVWLGTFGSDVDAARAYDFAAFEMRG 158
                  89*******.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-29107167IPR001471AP2/ERF domain
PfamPF008472.3E-11108158IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-21108167IPR016177DNA-binding domain
SMARTSM003801.6E-33108172IPR001471AP2/ERF domain
CDDcd000181.00E-26108166No hitNo description
PROSITE profilePS5103223.512108166IPR001471AP2/ERF domain
PRINTSPR003672.4E-12109120IPR001471AP2/ERF domain
PRINTSPR003672.4E-12148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSTLEESTAL QLIKQHLLDD GSSSLSYSSP AAAFISNFSS LPVKIKEEED QSTSPVRSPE  60
SELDCFFFQQ QSPEFLRDQT TSPKSAASCS PPLLVQSDEK VQEESGRKFR GVRKRPWGKY  120
AAEIRDPTRK GSRVWLGTFG SDVDAARAYD FAAFEMRGRK AILNFPLEAG KYDLPACTAS  180
RKRRKLKNEA AAAAPVNWED EDQKSLVWAL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25106167364ATERF1
3gcc_A4e-25106167364ATERF1
5wx9_A2e-2494168174Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032498
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297530.0EU829753.1 Linum usitatissimum clone LU0011F06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021616767.11e-48ethylene-responsive transcription factor ERF107-like
RefseqXP_021687037.15e-48ethylene-responsive transcription factor ERF107-like
TrEMBLA0A1L6CB051e-47A0A1L6CB05_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB781e-47A0A1L6CB78_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100324981e-153(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-43ERF family protein