PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032499
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 261aa    MW: 28286.6 Da    PI: 7.077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032499genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-2097147255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp++ g  +r++lg+f+ta eAaka+++a+  l+g
  Lus10032499  97 HYRGVRRRP-WGKYAAEIRDPTKKG--ARVWLGTFDTAVEAAKAYDNAAFHLRG 147
                  7********.**********97744..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3296156IPR001471AP2/ERF domain
PROSITE profilePS5103224.17197155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2397156IPR016177DNA-binding domain
PfamPF008475.8E-1397147IPR001471AP2/ERF domain
SMARTSM003801.2E-3797161IPR001471AP2/ERF domain
CDDcd000184.01E-3197155No hitNo description
PRINTSPR003671.3E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.3E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAFPHPEAST LDTIRQYLLA DCTASMDSYI SHLNLVKTEI QDHTTTKLSP SSSSSSSSLS  60
QRRKPSMISN ISIPRPSPPV DPTRIQPDSD PAEDDRHYRG VRRRPWGKYA AEIRDPTKKG  120
ARVWLGTFDT AVEAAKAYDN AAFHLRGSRA ILNFPLEAGR SSSSASDSGS LLGKEDLITE  180
NDSKKRKIGE IEDTDEVVKK AAKGENTNPA AQGGAEPDPV PLTPSSWKDF SDSISNSKGI  240
FSVPPLSPLS PMGYSWLMVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2996156161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8301671e-149EU830167.1 Linum usitatissimum clone LU0009A05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687038.14e-73ethylene-responsive transcription factor ERF105-like
TrEMBLB9NBQ95e-65B9NBQ9_POPTR; ERF family protein
STRINGLus100324990.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-53ERF family protein