PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032749
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 102aa    MW: 11411 Da    PI: 9.9043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032749genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.4e-125683298
                 --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  + t+t++ +s  +W+   + ++ +++++++  W+eF+  n L+ +D +vFk++++s+f   v++++
  Lus10032749  5 LPETVTVRGPSKIEWRAGSTAEN-DSGVFFSLSWREFAANNSLQPNDLLVFKYSDDSGF--DVGIVD 68
                 5679**************96444.45688999*********************999999..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.124170IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-12469IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-10468No hitNo description
Gene3DG3DSA:2.40.330.102.2E-11469IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-8566IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MRHKLPETVT VRGPSKIEWR AGSTAENDSG VFFSLSWREF AANNSLQPND LLVFKYSDDS  60
GFDVGIVDPA ISCETLHWIS PGKLRHLNGV VRLSQLQRRK K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D2QJW51e-13A0A0D2QJW5_GOSRA; Uncharacterized protein
TrEMBLA0A0D2S5701e-13A0A0D2S570_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TND11e-13A0A0D2TND1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TND72e-13A0A0D2TND7_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TT175e-14A0A0D2TT17_GOSRA; Uncharacterized protein
TrEMBLA0A0D2TT212e-13A0A0D2TT21_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UR562e-13A0A0D2UR56_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HKR42e-13A0A1U8HKR4_GOSHI; B3 domain-containing protein REM16-like isoform X1
TrEMBLA0A1U8HRR12e-13A0A1U8HRR1_GOSHI; B3 domain-containing protein REM16-like isoform X2
TrEMBLA0A2P5Q9552e-13A0A2P5Q955_GOSBA; Uncharacterized protein
TrEMBLA0A2P5XFT92e-13A0A2P5XFT9_GOSBA; Uncharacterized protein
STRINGLus100327496e-70(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-13B3 family protein