PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032764
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 269aa    MW: 29158.2 Da    PI: 8.3789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032764genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-183883147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v+++G+++W++I+r+++ gR++k+c++rw + 
      Lus10032764 38 KGPWSAEEDRVLTRLVERHGPRNWSLISRYIN-GRSGKSCRLRWCNQ 83
                     79******************************.***********985 PP
2Myb_DNA-binding521.6e-1692134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ed  ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
      Lus10032764  92 PFSASEDHTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 134
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.7843388IPR017930Myb domain
SuperFamilySSF466895.75E-3135131IPR009057Homeodomain-like
SMARTSM007171.7E-143786IPR001005SANT/Myb domain
PfamPF002491.1E-173883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-233991IPR009057Homeodomain-like
CDDcd001672.77E-154082No hitNo description
SMARTSM007172.5E-1389137IPR001005SANT/Myb domain
PROSITE profilePS5129419.91589139IPR017930Myb domain
PfamPF002497.5E-1492134IPR001005SANT/Myb domain
CDDcd001671.55E-1092135No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2192138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDPMLHNNNM CSTSSTTSDS SSSDSAATGS AKRTDRIKGP WSAEEDRVLT RLVERHGPRN  60
WSLISRYING RSGKSCRLRW CNQLCPTVQH RPFSASEDHT ILAAHARYGN RWATIARLLP  120
GRTDNAVKNH WNSTLKRRAF SGHGQTSSSS PPQAAVFHQR AASDGNYSTQ EYCWNYGEGC  180
LSPATPAAVV EVDTEETLTT LTLAPPGMGS GGGGQGMSNV AEEKRADSMP AGFWDVMRGV  240
IAKEVREYVN STMSSESPTP TAAASYFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-40371393105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-393713957159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-393713957159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-39371393105C-Myb DNA-Binding Domain
1msf_C1e-39371393105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032764
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071707.12e-90transcription factor MYB25
SwissprotO231602e-55MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KQI35e-89A0A067KQI3_JATCU; MYB family protein
STRINGLus100327640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-56myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]