PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032848
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 259aa    MW: 27906.4 Da    PI: 10.353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032848genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006792114123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C  C+ksFs+   L  H  +H
  Lus10032848  92 FNCAVCSKSFSSYQALGGHKASH 114
                  78**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-1392116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-792114No hitNo description
PROSITE profilePS501579.6692114IPR007087Zinc finger, C2H2
SMARTSM003550.2892114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-7143171No hitNo description
PfamPF139121.4E-12148173IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452149176IPR007087Zinc finger, C2H2
SMARTSM003551149171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAMEAVPSPT SATLLPSFQF HESNLNPLAK RKRSKRSSNH SPPTEEEYLA LCLLMLARGT  60
VSTPNFHFSN SHRSTSPPIA TSHQYQNLSP SFNCAVCSKS FSSYQALGGH KASHRKSALV  120
DQRPLPPTST TTTITTDTTS NSTGIDKAHE CSICHKNFPT GQALGGHKRC HYDSAADKNR  180
VIIASTSSTG SERVGSTTTN SSGSRMMQSH RRGLIDLNLP ALPQLAGDEE VTSPLPTVSK  240
KPRLTLRLLM RTTAPKAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601831.15e-65zinc finger protein ZAT10-like
TrEMBLA0A2C9U0J11e-63A0A2C9U0J1_MANES; Uncharacterized protein
STRINGLus100328480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-38zinc-finger protein 2