PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032952
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26149.2 Da    PI: 7.1929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032952genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-193589256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++++f++eq++ Le++Fe++ ++  ++++ +Ak+lgL+ rqV +WFqN+Ra+++
  Lus10032952 35 KSKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWR 89
                 67789*************************************************9 PP
2HD-ZIP_I/II117.29.2e-3836125291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   krr+s+eq+k+LE+ Fe+++kLep++K+ +a+eLglqprqva+WFqn+RAR+++kq+Ekdy+ Lk+ yd+l+++ e+L++e ++L  + 
  Lus10032952  36 SKRRFSDEQIKSLESFFESDTKLEPRKKTLIAKELGLQPRQVAIWFQNKRARWRSKQIEKDYKLLKADYDSLASRFESLQNERQSLLLQF 125
                  69**********************************************************************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-182292IPR009057Homeodomain-like
PROSITE profilePS5007117.7023191IPR001356Homeobox domain
SMARTSM003891.1E-173495IPR001356Homeobox domain
CDDcd000861.02E-153592No hitNo description
PfamPF000466.2E-173589IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-183798IPR009057Homeodomain-like
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PfamPF021833.1E-1391132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSETEFRPEA PDAKSETLEP PPQAPKKRKG SSNSKSKRRF SDEQIKSLES FFESDTKLEP  60
RKKTLIAKEL GLQPRQVAIW FQNKRARWRS KQIEKDYKLL KADYDSLASR FESLQNERQS  120
LLLQFENLNA LVEKTWGGDA DICKNLEGSG QVIGSDDKTI FEPEVPQVIQ NKVYTSSQSS  180
QYDGVQLMDK FHTSTEGSLA AAQEKWCSLN SSYQFDLPYG SSQGLNFWC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032952
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021644168.13e-67homeobox-leucine zipper protein ATHB-12-like
SwissprotP468971e-40ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLB9RPF22e-58B9RPF2_RICCO; Homeobox protein, putative
STRINGLus100329521e-168(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-37homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]