PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10033016

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ZF-HD

Protein Properties

Length: 107aa MW: 11463.6 Da PI: 8.5115

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10033016	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.3	6.5e-32	34	91	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY eC++NhAa++Gg avDGC+Efm+s+ +++t+ al+CaACgCHRnFHRre++ee Lus10033016 34 AIRYGECQRNHAANVGGFAVDGCREFMASSLDQATPLALTCAACGCHRNFHRRETQEE 91 689************************9999*******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.1E-28	35	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-20	35	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.7E-26	36	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.202	37	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048509	Biological Process	regulation of meristem development

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MRKRQVVVRR RSSEIEGSRS TSTREAAAGN SGTAIRYGEC QRNHAANVGG FAVDGCREFM 60 ASSLDQATPL ALTCAACGCH RNFHRRETQE EDAVSHYSSP TASATN*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10033016

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830493	1e-128	EU830493.1 Linum usitatissimum clone LU0022D02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583772.1	2e-36	mini zinc finger protein 2
Swissprot	Q2Q493	4e-29	MIF3_ARATH; Mini zinc finger protein 3
TrEMBL	B9T6Z4	5e-35	B9T6Z4_RICCO; Transcription factor, putative
STRING	Lus10033016	4e-72	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	2e-28	mini zinc finger

Link Out ? help Back to Top
Phytozome	Lus10033016