PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033061
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 130aa    MW: 14074 Da    PI: 4.7303
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.62.3e-381106267374
         GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                  +fdsl+a   + + +++ v ++++++ei+nvv+ceg++r erhe l+kWrerl+eaGFkp++l+++a kqa++ll  ++ +gy+vee +g+l+lgW++
  Lus10033061   1 MFDSLDAC--SIQAAEKAVAEMYIQKEICNVVSCEGSARLERHEPLSKWRERLNEAGFKPLHLGSNAFKQASMLLTLFSAEGYSVEETDGCLTLGWHS 96 
                  79***887..4567778888899*************************************************************************** PP

         GRAS 365 rpLvsvSaWr 374
                  rpL+++SaW+
  Lus10033061  97 RPLIAASAWQ 106
                  *********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.752186IPR005202Transcription factor GRAS
PfamPF035147.8E-361106IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MFDSLDACSI QAAEKAVAEM YIQKEICNVV SCEGSARLER HEPLSKWRER LNEAGFKPLH  60
LGSNAFKQAS MLLTLFSAEG YSVEETDGCL TLGWHSRPLI AASAWQALPE IPVPDIAVVN  120
ERNGGAGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-161105273378Protein SCARECROW
5b3h_A4e-161105272377Protein SCARECROW
5b3h_D4e-161105272377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529354.12e-61DELLA protein SLN1
SwissprotQ6EI061e-42GAIP_CUCMA; DELLA protein GAIP
TrEMBLB9STN55e-60B9STN5_RICCO; DELLA protein GAI1, putative
STRINGLus100177584e-87(Linum usitatissimum)
STRINGLus100330613e-91(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-42GRAS family protein