PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033102
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 291aa    MW: 33513.9 Da    PI: 4.2798
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033102genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.2e-1882135356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q++ Le+ Fe ++++  e++++LAk l+L+ rqV +WFqNrRa++k
  Lus10033102  82 KKRRLSIDQVKFLEQSFEVDNKLEPERKTQLAKDLSLQPRQVAIWFQNRRARWK 135
                  5668999**********************************************9 PP
2HD-ZIP_I/II127.27.2e-4181172192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls +qvk+LE+sFe ++kLeperK++la++L lqprqva+WFqnrRAR+ktkqlE+dy++L ++yd+lk++ + L ke+++L++e++
  Lus10033102  81 EKKRRLSIDQVKFLEQSFEVDNKLEPERKTQLAKDLSLQPRQVAIWFQNRRARWKTKQLEQDYRTLESSYDTLKADCDCLVKENDQLKTEIN 172
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1871139IPR009057Homeodomain-like
PROSITE profilePS5007117.26577137IPR001356Homeobox domain
SMARTSM003891.1E-1780141IPR001356Homeobox domain
PfamPF000462.0E-1582135IPR001356Homeobox domain
CDDcd000865.24E-1682138No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1884144IPR009057Homeodomain-like
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PfamPF021833.8E-15137179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAAANGNDTG DCITNFALLN QTPTFSGPLE PVVLTRSSSP SFFGRRSRVR FEDAVRLFQL  60
NENGDDDDEY DDLDEYFRQP EKKRRLSIDQ VKFLEQSFEV DNKLEPERKT QLAKDLSLQP  120
RQVAIWFQNR RARWKTKQLE QDYRTLESSY DTLKADCDCL VKENDQLKTE INLLTDKLQM  180
KKENVEKVMI VCEEPLQKPC AAIDWGSPDV VSCKQDDMSS ARSDLFDSDS PHGVHSSLLD  240
ESDHSQDEED NSSKSLLPES YFFPKLEDDD YSDPSANFED HSFWSTSWPY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8305571e-174EU830557.1 Linum usitatissimum clone LU0025E09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679221.11e-103homeobox-leucine zipper protein HAT5-like
SwissprotQ022835e-43HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA9PHH03e-99A9PHH0_POPTR; HD-ZIP family protein
STRINGLus100331020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]