PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033120
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 267aa    MW: 29017.2 Da    PI: 6.5304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033120genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10148194555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Lus10033120 148 HSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194
                  999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-17141213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.161143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-18146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-9148198No hitNo description
PfamPF000101.5E-7148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDPPLINESS FSSANPASYS LVEIWPFHVQ GAAPAGGAGG SGLRMSNFGF SVGDRDGSAE  60
ESTVTDQSAG AGRKRRDFSS EDESSRMVST TSSGNELNDS KNKRMKQSGS RNETDSSNPA  120
AAQSKPSEPP KQDFIHIRAR RGQATDCHSL AERARREKIS ERMKLLQDLV PGCNKVIGKA  180
LVLDEIINYI QSLQRQVEFL SMKLEAVNAR MSMNLTMDSF NPKDIGSQPF DGNGMMYGQQ  240
ATRDYVQGPQ AEWLHMQVGG GFERSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476705.11e-134transcription factor bHLH79
SwissprotQ9LV171e-87BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A067FUM31e-131A0A067FUM3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NFU81e-131A0A2H5NFU8_CITUN; Uncharacterized protein
STRINGLus100331200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.18e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]