PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033212
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 140aa    MW: 15835.8 Da    PI: 5.2613
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033212genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-071458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W  +ar +g g+++ ++k ++
      Lus10033212 14 SWTAKQNKLFERALAVYDKDtpdRWQNVARAVGGGKSADEVKRHY 58
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.2E-61164IPR001005SANT/Myb domain
PROSITE profilePS500906.331362IPR017877Myb-like domain
SuperFamilySSF466891.08E-101368IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MTSNYLPSHG SSSSWTAKQN KLFERALAVY DKDTPDRWQN VARAVGGGKS ADEVKRHYDR  60
LVVDLMYIES GEAPLPNYRN PVNNGFAEEQ SAFEETCRSQ LEMETWNVPS GIWRNALIEL  120
LGQLWPPPLL VERAVLERK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-29890485RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033212
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028852.16e-37PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1733e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2H3XE857e-34A0A2H3XE85_PHODC; protein RADIALIS-like 3 isoform X1
STRINGLus100332121e-100(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-32RAD-like 6