PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033562
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 204aa    MW: 23179.3 Da    PI: 9.3281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033562genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.7e-0995142455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L+el+P +    +k +  a +Le+ ++Y+ sLq
  Lus10033562  95 SHSVAERVRREKINNKLRCLQELVPGC----HKSMGMAVMLEEIINYVYSLQ 142
                  8*************************9....788999**********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-889146No hitNo description
SuperFamilySSF474591.7E-1589152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1591139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.80591141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-695142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-797147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF534744.68E-5128199IPR029058Alpha/Beta hydrolase fold
PfamPF121461.5E-10133201IPR022742Serine aminopeptidase, S33
Gene3DG3DSA:3.40.50.18202.6E-6140198IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAEFNTQQYW HQRLGTSHHH FPITLDQYSL LPQQQQYYQQ GSSASLDADQ HIASSSSSPR  60
ANEILGSVRR SRKKKTSGNG EVVHVRARRG QATDSHSVAE RVRREKINNK LRCLQELVPG  120
CHKSMGMAVM LEEIINYVYS LQNQVEAAYN VIAYRQKPRL RTALEMLRTT QEIEQRLEEV  180
SVPMLILHGD ADIVTDPLVS KLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RRSRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100335621e-150(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.14e-35BR enhanced expression 1