PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033650
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 147aa    MW: 16838 Da    PI: 9.6279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033650genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.43e-15221394104
          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkya.tgkrknra.......tksg 81 
                   +rF+Pt+++lv ++L +k++g+  +  + i e+d+y +ePw L +             v+ +++ +yf++k ++k+  +g+rk+          k g
  Lus10033650  22 AIRFRPTEKQLVGQFLLRKIRGTCDPD-DPIVEADLYATEPWLLWEaysssreqshgaDVDDRDEILYFYTKLKSKKLsNGERKSSRidravadGKGG 118
                  68********************99777.89**************644677776655443333445569999976665436665543324444444489 PP

          NAM  82 yWkatgkdkevlskkgelvglkk 104
                  +W++     ++++ +++lv  kk
  Lus10033650 119 TWHQEAV-SKIYV-RHHLVTKKK 139
                  9**8876.55666.444555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-147129IPR003441NAC domain
PROSITE profilePS5100515.85119146IPR003441NAC domain
PfamPF023652.4E-822132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDADQIMENR KNFFASLNLS SAIRFRPTEK QLVGQFLLRK IRGTCDPDDP IVEADLYATE  60
PWLLWEAYSS SREQSHGADV DDRDEILYFY TKLKSKKLSN GERKSSRIDR AVADGKGGTW  120
HQEAVSKIYV RHHLVTKKKN KQGTFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100336501e-106(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.13e-09NAC domain containing protein 45